Key Features

• Data Import: analycyte supports the import of formatted output as Excel files, which include extracted features with tables of abundance and MFI (e.g., from OMIQ), or concatenated .fcs files featuring clustering columns (e.g., from FlowJo). In both cases, it is necessary to load a metadata table specifying sample information.

• Exploratory and Supervised Analyses: analycyte facilitates both exploratory and supervised analyses of features, allowing for deeper insights into your cytometry data.

• Standardized and Reproducible Reporting: Quickly generate standardized and informative reports to ensure consistency and clarity in your analyses.

  • Quality Control: Assess the quality of your data and identify any outliers or anomalies.
  • Differentially Abundant Clusters Between Groups: Identify clusters or groups of features showing differential abundance across various experimental conditions or groups.
  • Differential State Analysis: Analyze changes in the state of features across different conditions or over time.

• User Interaction Tracking: The parameters selected for report generation are recorded in .yml files in each hashed folder.

• Analyses are exported along with a spreadsheet that describes the steps followed by each user.

• Access to Template Documents: Each analysis folder retrieved from the application contains a progs folder with the .qmd template documents used for report creation.

• Access to Analysis Environment: Each analysis folder retrieved from the application is accompanied by an .Rproj file.